Ceku appointed Rexhepi's deputy, Blerim Kuqi, as the new acting minister of the interior.
The situation in Kosovo returned to normal on Tuesday following the violent rally held by the Self-Determination movement. A dozen people were injured in clashes between demonstrators and police.
An official of the UN Mission in Kosovo, Steven Curtis, said that the findings of an autopsy showed that the two protestors died after they were hit to the head by rubber bullets fired by the police.